Software engineermore_vert

Full-stack, big data.

Education
  • 2008-2010 Master Biology, Health, Bioinformatics mention, Bordeaux, France
  • 2007-2008 Master Biology, Health, Plants Biotechnology mention, Bordeaux, France
  • 2004-2006 Preparatory classes, Montaigne, Bordeaux
  • 2004 Scientific Bachelor, Biology specialty
Entrepreneurmore_vert

Visit Omics Services

Omics Services

Young company providing Big Data analysis services especially in the biotechnology, pharmaceutics industries.

flash_on

Fast learner

What I like most is to learn new things, technologies, training and finally put everything in a remote server to test if it scales.

settings

User Experience Focused

I am sensible to User eXperience, i.e. I like to develop nice interactive user interfaces providing more feedback to the user.

group

Easy to work with

Working alone only serves to train. Best ideas come from discussions with other developers and big projects can only be realised with the help of others.

Experiences

What I learnt...
Unsplashed background img 1
  • Structural Biology and Pharmacology institute: Mass spectrometry proteomics data processing
    • New file format development for easy data extraction: mzDB
    • Algorithms to perform label-free quantitation of proteins in samples
    • 3D Visualization of mass spectrometry in the browser
  • National institute for agronomical research: Data treatment of metabolomics data
    • Developing new algorithm for metabolite identification and characterization
    • Complex user interface design.
  • Bordealais informatics research laboratory: Algorithm for computing association rules from elementary modes: example in the tomato
    • Using data mining algorithm, A-priorin and FP-Tree
    • User interface design

Skills

What I know...
Unsplashed background img 1
  • Python

    Good proficiency

    90
  • C++

    Good proficiency

    80
  • Java

    Good proficiency

    80
  • Scala

    Good proficiency

    80
Flask

Used for rapid prototyping of new applications.

Play! Framework

Java/Scala backend for performant applications.

Bootstrap
Primercss
MaterializeCSS

I am used to prototype performant algorithms for big data processing. I wrote some R code to analyse complex dataset (DataMining, Machine Learning).

I am familiar with svn, git, github. I hosted some projects on DigitalOcean and Heroku.

Sublime text are my favorite text editor even if i use more and more atom and IntelliJ are my favorite IDEs



Projects

What I did...
Unsplashed background img 1
mzDBmore_vert

Efficient file format for storing mass spectrometry data.

mzDB

C++11

Tool for converting vendor proprietary file formats to mzDB. mzDB allows fast data extraction thanks to sqlite and its R* tree.

metabomatchmore_vert

Listing and comparing open metabolomics softwares.

metabomatch

Python/Flask/Bootstrap

Simple website for listing metabolomics open sourced softwares, comments, pros-cons, and small statistics about users community.

Speclightmore_vert

Visualization of mass spectrometry data.

Speclight

Javascript/Three.js

Using the magnificient three.js library and mzDB file we developed a performant tool to visualize mass spectrometry data in 3D.

Prolinemore_vert

Proteomics analysis software.

Proline

Java/Scala/Swing

Proline is a new software for proteomics data analysis. I mainly worked on label-free quantitation algorithms.